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Bio-KBase-0.06
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/ er_scripts/query_entity_Assay

query_entity_Assay

Query the entity Assay.

An assay is an experimental design for determining alleles at specific chromosome positions.

Example:

    query_entity_Assay -a

The Assay entity has the following relationship links:

IsAssayOf StudyExperiment

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt
> or gt
<= or le
>= or ge
=
LIKE
-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

source_id
assay_type
assay_type_id

Output Format

The standard output is a tab-delimited file containing a column for each requested field.