Example:
fids_to_regulon_data [arguments] < input > output
The standard input should be a tab-separated table (i.e., each line is a tab-separated set of fields). Normally, the last field in each line would contain the identifer. If another column contains the identifier use
-c N
where N is the column (from 1) that contains the subsystem.
This is a pipe command. The input is taken from the standard input, and the output is to the standard output.
This script is a wrapper for the CDMI-API call fids_to_regulon_data. It is documented as follows:
$return = $obj->fids_to_regulon_data($fids)
$fids is a fids $return is a reference to a hash where the key is a fid and the value is a regulons_data fids is a reference to a list where each element is a fid fid is a string regulons_data is a reference to a list where each element is a regulon_data regulon_data is a reference to a hash where the following keys are defined: regulon_id has a value which is a regulon regulon_set has a value which is a fids tfs has a value which is a fids regulon is a string
This is used only if the column containing the subsystem is not the last column.
Display a list of the fields available for use.
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available: regulon_id, regulon_set, tfs.
The standard output is a tab-delimited file. It consists of the input file with extra columns added.
Input lines that cannot be extended are written to stderr.
To install Bio::KBase, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::KBase
CPAN shell
perl -MCPAN -e shell install Bio::KBase
For more information on module installation, please visit the detailed CPAN module installation guide.