Bio::Phylo::Unparsers::Pagel - Unparses pagel data files. No serviceable parts inside.
This module unparses a Bio::Phylo data structure into an input file for Discrete/Continuous/Multistate. The pagel file format (as it is interpreted here) consists of:
the number of tips, the number of characters
offspring name, parent name, branch length, character state(s).
During unparsing, the tree is randomly resolved, and branch lengths are formatted to %f floats (i.e. integers, decimal point, integers).
The pagel module is called by the Bio::Phylo::IO object, so look there to learn how to create Pagel formatted files.
The pagel unparser is called by the Bio::Phylo::IO object. Look there to learn how to create pagel formatted files.
Also see the manual: Bio::Phylo::Manual.
$Id: Pagel.pm 4213 2007-07-15 03:11:27Z rvosa $
To install Bio::Phylo, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Phylo
CPAN shell
perl -MCPAN -e shell install Bio::Phylo
For more information on module installation, please visit the detailed CPAN module installation guide.