NAME
Bio::Phylo::Unparsers::Pagel - Unparses pagel data files. No serviceable parts inside.
DESCRIPTION
This module unparses a Bio::Phylo data structure into an input file for Discrete/Continuous/Multistate. The pagel file format (as it is interpreted here) consists of:
- first line
-
the number of tips, the number of characters
- subsequent lines
-
offspring name, parent name, branch length, character state(s).
During unparsing, the tree is randomly resolved, and branch lengths are formatted to %f floats (i.e. integers, decimal point, integers).
The pagel module is called by the Bio::Phylo::IO object, so look there to learn how to create Pagel formatted files.
SEE ALSO
- Bio::Phylo::IO
-
The pagel unparser is called by the Bio::Phylo::IO object. Look there to learn how to create pagel formatted files.
- Bio::Phylo::Manual
-
Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com.
REVISION
$Id: Pagel.pm 604 2008-09-05 17:32:28Z rvos $