Bio::MapIO::mapmaker - A Mapmaker Map reader
# do not use this object directly it is accessed through the Bio::MapIO system
use Bio::MapIO; my $mapio = new Bio::MapIO(-format => "mapmaker", -file => "mapfile.map"); while ( my $map = $mapio->next_map ) { # get each map foreach my $marker ( $map->each_element ) { # loop through the markers associated with the map } }
This object contains code for parsing and processing Mapmaker output and creating Bio::Map::MapI objects from it.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next_map Usage : my $map = $factory->next_map; Function: Get one or more map objects from the Mapmaker input Returns : Bio::Map::MapI Args : none
See Bio::Map::MapI
Title : write_map Usage : $factory->write_map($map); Function: Write a map out through the factory Returns : none Args : Bio::Map::MapI
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.