Bio::DB::EUtilities::egquery - counts for a global query of Entrez databases
my $egquery = Bio::DB::EUtilities->new( -eutil => 'egquery', -term => 'dihydroorotase' ); print $egquery->get_response->content;
EGQuery provides Entrez database counts in XML for a single search using NCBI's Global Query. No further parsing of the XML data is processed at this time.
The following are a general list of parameters that can be used to take advantage of EGQuery. Up-to-date help for EGQuery is available at this URL (the information below is a summary of the options found there):
http://eutils.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html
term
Search term or phrase with or without Boolean operators. This can use search field descriptions and tags (Note: these may be database specific and are better used with ESearch.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@lists.open-bio.org - General discussion http://www.bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web.
http://bugzilla.open-bio.org/
Email cjfields at uiuc dot edu
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : parse_response Usage : $db->_parse_response($content) Function: parse out response for cookie Returns : empty Args : none Throws : 'unparseable output exception'
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.