Bio::Matrix::Scoring - Object which can hold scoring matrix information
use Bio::Matrix::Scoring;
An object which can handle AA or NT scoring matrix information. Some transformation properties are available too.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::Matrix::Scoring(); Function: Builds a new Bio::Matrix::Scoring object Returns : an instance of Bio::Matrix::Scoring Args :
Title : entropy Usage : $obj->entropy($newval) Function: Example : Returns : value of entropy (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : expected_score Usage : $obj->expected_score($newval) Function: Example : Returns : value of expected (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : scale Usage : $obj->scale($newval) Function: Example : Returns : value of scale (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : scale_value Usage : $obj->scale_value($newval) Function: Example : Returns : value of scale_value (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : description Usage : $obj->description($newval) Function: Example : Returns : value of description (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : database Usage : $obj->database($newval) Function: Example : Returns : value of database (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : lowest_score Usage : $obj->lowest_score($newval) Function: Example : Returns : value of lowest_score (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : highest_score Usage : $obj->highest_score($newval) Function: Example : Returns : value of highest_score (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : lambda Usage : $obj->lambda($newval) Function: Example : Returns : value of lambda (a scalar) Args : on set, new value (a scalar or undef, optional)
Title : H Usage : $obj->H($newval) Function: Example : Returns : value of H (a scalar) Args : on set, new value (a scalar or undef, optional)
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.