Bio::Biblio::MedlineArticle - Representation of a MEDLINE article
$obj = new Bio::Biblio::MedlineArticle (-mesh_headings => #array ref of hashes ); # how are Mesh terms stored: use Data::Dumper; print Data::Dumper->Dump ( [$obj->mesh_headings], ['MeshHeadings']); #It produces (something like) this: #'MeshHeadings' => [ # { 'descriptorName' => 'Adult' }, # { 'descriptorName' => 'Cardiovascular Diseases', # 'subHeadings' => [ { 'subHeading' => 'etiology' }, # { 'majorTopic' => 'Y', # 'subHeading' => 'mortality' } ] }, # { 'descriptorName' => 'Child Development', # 'subHeadings' => [ { 'majorTopic' => 'Y', # 'subHeading' => 'physiology' } ] }, # { 'descriptorName' => 'Human' }, # ]
A storage object for a MEDLINE article. See its place in the class hierarchy in http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif
The following attributes are specific to this class (however, you can also set and get all attributes defined in the parent classes):
affiliation chemicals type: array ref of hashes citation_owner comment_ins type: array ref of hashes comment_ons type: array ref of hashes date_of_electronic_publication erratum_fors type: array ref of hashes erratum_in type: array ref of hashes gene_symbols general_notes type: array ref of hashes grant_list_complete grants type: array ref of hashes medline_date medline_id medline_page mesh_headings type: array ref of hashes number_of_references original_report_ins type: array ref of hashes other_abstracts type: array ref of hashes other_ids type: array ref of hashes other_languages pmid republished_froms type: array ref of hashes republished_ins type: array ref of hashes retraction_ins type: array ref of hashes retraction_ofs type: array ref of hashes season status summary_for_patients_ins type: array ref of hashes update_ins type: array ref of hashes update_ofs type: array ref of hashes vernacular_title
OpenBQS home page: http://www.ebi.ac.uk/~senger/openbqs/
Comments to the Perl client: http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
Heikki Lehvaslaiho (heikki-at-bioperl-dot-org), Martin Senger (senger@ebi.ac.uk)
Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
This software is provided "as is" without warranty of any kind.
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.