Bio::Matrix::IO::phylip - A parser for PHYLIP distance matricies
use Bio::Matrix::IO; my $parser = new Bio::Matrix::IO(-format => 'phylip' -file => 't/data/phylipdist.out'); my $matrix = $parser->next_matrix;
This is a parser for PHYLIP distance matrix output.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::Matrix::IO::phylip(); Function: Builds a new Bio::Matrix::IO::phylip object Returns : an instance of Bio::Matrix::IO::phylip Args :
Title : next_matrix Usage : my $matrix = $parser->next_matrix Function: Get the next result set from parser data Returns : L<Bio::Matrix::PhylipDist> Args : none
Title : write_matrix Usage : $matio->write_matrix($matrix) Function: Write out a matrix in the phylip distance format Returns : none Args : L<Bio::Matrix::PhylipDist>
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.