Sendu Bala
and 1 contributors

NAME

Bio::Seq::SeqFastaSpeedFactory - Instantiates a new Bio::PrimarySeqI (or derived class) through a factory

SYNOPSIS

    use Bio::Seq::SeqFastaSpeedFactory;
    my $factory = new Bio::Seq::SeqFastaSpeedFactory;
    my $seq = $factory->create(-seq => 'WYRAVLC',
                               -id  => 'name');

    # If you want the factory to create Bio::Seq objects instead
    # of the default Bio::PrimarySeq objects, use the -type parameter:

    my $factory = new Bio::Seq::SeqFastaSpeedFactory(-type => 'Bio::Seq');

DESCRIPTION

This object will build Bio::Seq objects generically.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHOR - Jason Stajich

Email jason@bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = new Bio::Seq::SeqFastaSpeedFactory();
 Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object 
 Returns : Bio::Seq::SeqFastaSpeedFactory
 Args    : -type => string, name of a PrimarySeqI derived class
                    This is optional. Default=Bio::PrimarySeq.

create

 Title   : create
 Usage   : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
 Function: Instantiates a new Bio::Seq object, correctly built but very
           fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
 Returns : Bio::Seq

 Args    : initialization parameters specific to the type of sequence
           object we want.  Typically 
           -seq        => $str,
           -id         => $name