Sendu Bala
and 1 contributors

NAME

Bio::Tree::Statistics - Calculate certain statistics for a Tree

SYNOPSIS

  use Bio::Tree::Statistics;

DESCRIPTION

This should be where Tree statistics are calculated. It was previously where statistics from a Coalescent simulation. Currently it is empty because we have not added any Tree specific statistic calculations to this module yet. We welcome any contributions.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHOR - Jason Stajich

Email jason@bioperl.org

CONTRIBUTORS

none so far

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = new Bio::Tree::Statistics();
 Function: Builds a new Bio::Tree::Statistics object 
 Returns : Bio::Tree::Statistics
 Args    :

assess_bootstrap

 Title   : assess_bootstrap
 Usage   : my $tree_with_bs = $stats->assess_bootstrap(\@bs_trees);
 Function: Calculates the bootstrap for internal nodes based on
 Returns : L<Bio::Tree::TreeI>
 Args    : Arrayref of L<Bio::Tree::TreeI>s