gccalc - GC content of nucleotide sequences
gccalc [-f/--format FORMAT] [-h/--help] filename or gccalc [-f/--format FORMAT] < filename or gccalc [-f/--format FORMAT] -i filename
This scripts prints out the GC content for every nucleotide sequence from the input file.
The default sequence format is fasta.
The sequence input can be provided using any of the three methods:
gccalc filename
gccalc -i filename
gccalc < filename
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
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Email jason@bioperl.org
Based on script code (see bottom) submitted by cckim@stanford.edu
Submitted as part of bioperl script project 2001/08/06
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.