bp_nrdb.PLS - a script to emulate Warren Gish's nrdb, make a unique sequence database from a set of input databases
Usage: bp_nrdb.PLS [options] file1 file2 file3
Alternative usage bp_nrdb.PLS -p [options] file1 id1 file2 id2 file3 id3
This script will create a unique database of sequences (quasi-nonredundant). The options are:
-o filename - the filename the db is written (STDOUT by default) -a filename - the filename to append the db to -l# - minimum required sequence length -i - do not check for duplicates -n# - max number of descriptions to report per seq -d# - delimiter to use between consecutive descriptions -p - use database id prefixes from command line
Jason Stajich, jason-at-bioperl-dot-org
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.