Bio::DB::EUtilities::ElinkData
*** Give standard usage here
*** Describe the object here
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : elink_dbfrom Usage : $dbfrom = $linkset->elink_dbfrom; Function: gets/sets dbfrom value Returns : originating database Args : originating database
Title : elink_queryids Usage : @ids = $linkset->elink_queryids; Function: gets/sets original query ID values (ref to array) Returns : array or array ref of IDs (based on wantarray) Args : array ref of IDs
Title : elink_command Usage : $cmd = $linkset->elink_command; Function: gets/sets cmd used for elink query Returns : string (cmd parameter) Args : string (cmd parameter)
Title : get_LinkIds_by_db Usage : @ids = $linkset->get_LinkIds_by_db('protein'); Function: retrieves primary ID list based on the database for the object Returns : array or array ref of IDs (based on wantarray) Args : None
Title : next_linkdb Usage : while (my $db = $linkset->next_linkdb) { Function: iterates through list of database names in internal queue Returns : String (name of database) Args : None
Title : get_all_linkdbs Usage : @dbs = $linkset->get_all_linkdbs; Function: returns all database names which contain IDs Returns : array or array ref of databases (based on wantarray) Args : None
Title : next_scoredb Usage : while (my $db = $linkset->next_scoredb) { Function: iterates through list of database with score values Returns : String (name of database) Args : None
Title : get_all_scoredbs Usage : @dbs = $linkset->get_all_scoredbs; Function: returns database names which contain scores Returns : array or array ref of databases (based on wantarray) Args : None
Title : get_score Usage : $score = $linkset->get_score($id); Function: returns score value for ID Returns : score value Args : ID Note : if multiple databases are returned with scores (rare but possible), : you must set the default score database using set_scoredb. If you : use next_scoredb to iterate through the databases, this is done for you
Title : get_score_hash Usage : %scores = $linkset->get_score_hash($database); Function: returns ID(key)-score(value) hash based on database name Returns : score value Args : OPTIONAL : database name. If there is only one score hash, returns : that hash, otherwise throws an exception
Title : set_scoredb Usage : $linkset->set_scoredb('protein'); Function: sets the database to retrieve scores from Returns : None Args : database name
Title : rewind_linkdbs Usage : $linkset->rewind_linkdbs; Function: resets the iterator for next_database Returns : None Args : None
Title : rewind_scoredbs Usage : $linkset->rewind_scoredbs; Function: resets the iterator, current database for next_scoredb Returns : None Args : None
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.