NAME

Bio::Tools::Run::PiseApplication::drawgram

SYNOPSIS

  #

DESCRIPTION

Bio::Tools::Run::PiseApplication::drawgram

      Bioperl class for:

        Phylip  drawgram - Plots a cladogram- or phenogram-like rooted tree (Felsenstein)

        References:

                Felsenstein, J.  1993.  PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author.  Department of Genetics, University of Washington, Seattle.

                Felsenstein, J.  1989.  PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics  5: 164-166.



      Parameters: 

        (see also:
          http://bioweb.pasteur.fr/seqanal/interfaces/drawgram.html 
         for available values):


                drawgram (String)

                treefile (InFile)
                        Tree File
                        pipe: phylip_tree

                screen_type (String)

                plotter (Excl)
                        Which plotter or printer will the tree be drawn on

                xres (Float)
                        X resolution

                yres (Float)
                        Y resolution

                laserjet_resolution (Excl)
                        Laserjet resolution

                pcx_resolution (Excl)
                        Paintbrush PCX resolution

                screen (String)

                grows (Excl)
                        Tree grows...

                tree_style (Excl)
                        Tree style

                branch_lengths (Switch)
                        Use branch lengths

                horizontal_margins (Float)
                        Horizontal margins

                vertical_margins (Float)
                        Vertical margins

                scale (Float)
                        Scale of branch length (default: Automatically rescaled)

                depth (Float)
                        Depth/Breadth of tree

                stem (Float)
                        Stem-length/tree-depth

                character_height (Float)
                        Character ht / tip space

                ancestral (Excl)
                        Ancestral nodes

                font (String)
                        Font (PostScript only)

                tops (String)

                topict (String)

                confirm (String)

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHOR

Catherine Letondal (letondal@pasteur.fr)

COPYRIGHT

Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER

This software is provided "as is" without warranty of any kind.

SEE ALSO

• http://bioweb.pasteur.fr/seqanal/interfaces/drawgram.html

• Bio::Tools::Run::PiseApplication

• Bio::Tools::Run::AnalysisFactory::Pise

• Bio::Tools::Run::PiseJob

new

 Title   : new()
 Usage   : my $drawgram = Bio::Tools::Run::PiseApplication::drawgram->new($location, $email, @params);
 Function: Creates a Bio::Tools::Run::PiseApplication::drawgram object.
           This method should not be used directly, but rather by 
           a Bio::Tools::Run::AnalysisFactory::Pise instance.
           my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new();
           my $drawgram = $factory->program('drawgram');
 Example : -
 Returns : An instance of Bio::Tools::Run::PiseApplication::drawgram.