NAME

Bio::Tools::Run::PiseApplication::psort2

SYNOPSIS

  #

DESCRIPTION

Bio::Tools::Run::PiseApplication::psort2

      Bioperl class for:

        PSORT   predicts protein subcellular localization sites from their amino acid sequences (Psort version II) (Nakai, K. and Horton, P.)

        References:

                PSORT: a program for detecting the sorting signals of proteins and predicting their subcellular localization,trends Biochem. Sci., in press, 1999.



      Parameters: 

        (see also:
          http://bioweb.pasteur.fr/seqanal/interfaces/psort2.html 
         for available values):


                psort2 (String)

                seqfile (Sequence)
                        Protein sequence file

                Verbose (Switch)
                        Verbose mode

                htmlfile (OutFile)

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHOR

Catherine Letondal (letondal@pasteur.fr)

COPYRIGHT

Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER

This software is provided "as is" without warranty of any kind.

SEE ALSO

• http://bioweb.pasteur.fr/seqanal/interfaces/psort2.html

• Bio::Tools::Run::PiseApplication

• Bio::Tools::Run::AnalysisFactory::Pise

• Bio::Tools::Run::PiseJob

new

 Title   : new()
 Usage   : my $psort2 = Bio::Tools::Run::PiseApplication::psort2->new($location, $email, @params);
 Function: Creates a Bio::Tools::Run::PiseApplication::psort2 object.
           This method should not be used directly, but rather by 
           a Bio::Tools::Run::AnalysisFactory::Pise instance.
           my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new();
           my $psort2 = $factory->program('psort2');
 Example : -
 Returns : An instance of Bio::Tools::Run::PiseApplication::psort2.