Bio::Tools::Run::Prints
Build a Prints factory my @params = ('DB',$dbfile); my $factory = Bio::Tools::Run::Prints->new($params); # Pass the factory a Bio::Seq object # @feats is an array of Bio::SeqFeature::Generic objects my @feats = $factory->run($seq);
FingerPRINTScan II is a PRINTS fingerprint identification algorithm. Copyright (C) 1998,1999 Phil Scordis
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : program_name Usage : $factory>program_name() Function: holds the program name Returns: string Args : None
Title : program_dir Usage : $factory->program_dir(@params) Function: returns the program directory, obtiained from ENV variable. Returns: string Args :
Title : new Usage : $prints->new(@params) Function: creates a new Prints factory Returns: Bio::Tools::Run::Prints Args :
Title : predict_protein_features() Usage : DEPRECATED. Use $obj->run($seqFile) instead. Function: Runs Prints and creates an array of featrues Returns : An array of Bio::SeqFeature::Generic objects Args : A Bio::PrimarySeqI
Title : run Usage : $obj->run($seq) Function: Runs Prints Returns : An array of Bio::SeqFeature::Generic objects Args : A Bio::PrimarySeqI, or a Fasta file name
Title : _input Usage : obj->_input($seqFile) Function: Internal(not to be used directly) Returns : Args :
Title : _run Usage : $obj->_run() Function: Internal(not to be used directly) Returns : An array of Bio::SeqFeature::Generic objects Args :
Title : _writeSeqFile Usage : obj->_writeSeqFile($seq) Function: Internal(not to be used directly) Returns : Args :
To install Bio::Factory::EMBOSS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Factory::EMBOSS
CPAN shell
perl -MCPAN -e shell install Bio::Factory::EMBOSS
For more information on module installation, please visit the detailed CPAN module installation guide.