Bio::MAGETAB::Util::Writer::GraphViz - Visualization of MAGE-TAB objects.
use Bio::MAGETAB::Util::Writer::GraphViz; my $graphviz = Bio::MAGETAB::Util::Writer::GraphViz->new({ sdrfs => \@sdrfs, font => 'luxisr', }); my $image = $graphviz->draw(); print $fh $image->as_png();
This is a simple visualization class for MAGE-TAB objects. Given a list of Bio::MAGETAB::SDRF objects and a filehandle, it will return a GraphViz object which can then be written to file in a number of formats.
A list of Bio::MAGETAB::SDRFs object to visualize. This is a required attribute. See the SDRF class for more information on this class.
The font used for object labels in the output.
A GraphViz object. If this is not supplied, a default object will be created; this attribute is provided so that you have a means of accessing the underlying graph generation object.
Creates a GraphViz graph in memory ready for output.
Bio::MAGETAB::SDRF, GraphViz
Tim F. Rayner <tfrayner@gmail.com>
This library is released under version 2 of the GNU General Public License (GPL).
To install Bio::MAGETAB, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MAGETAB
CPAN shell
perl -MCPAN -e shell install Bio::MAGETAB
For more information on module installation, please visit the detailed CPAN module installation guide.