App::Sandy::Command::Quality::Add - quality subcommand class. Add a quality profile to the database.
version 0.19
sandy quality add -q <entry name> [-s <source>] [-e <error>] [-1] FILE Arguments: a file (fastq or a matrix with quality entries only) Mandatory options: -q, --quality-profile a quality-profile name Options: -h, --help brief help message -u, --man full documentation -v, --verbose print log messages -s, --source quality-profile source detail for database -1, --single-molecule constraint to single-molecule sequencing (as Pacbio and Nanopore) -e, --sequencing-error sequencing error rate [default:"0.001"; Number]
Add a quality profile to the database.
Thiago L. A. Miller <tmiller@mochsl.org.br>
J. Leonel Buzzo <lbuzzo@mochsl.org.br>
Gabriela Guardia <gguardia@mochsl.org.br>
Fernanda Orpinelli <forpinelli@mochsl.org.br>
Pedro A. F. Galante <pgalante@mochsl.org.br>
This software is Copyright (c) 2018 by Teaching and Research Institute from Sírio-Libanês Hospital.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install App::Sandy, copy and paste the appropriate command in to your terminal.
cpanm
cpanm App::Sandy
CPAN shell
perl -MCPAN -e shell install App::Sandy
For more information on module installation, please visit the detailed CPAN module installation guide.