fromgff3
Usage: recs fromgff3 <args> [<files>] Each line of input (or lines of <files>) is parsed as a GFF3 (General Feature Format version 3) formatted record to produce a recs output record. The output records will contain the following fields: seq_id source type start end score strand phase attributes Additional feature attributes are parsed into the "attributes" key, which is a hash keyed by the attribute name. The values are arrays. Refer to the GFF3 spec for field details: https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md Arguments: --filename-key|fk <keyspec> Add a key with the source filename (if no filename is applicable will put NONE) Help Options: --help This help screen Examples: Parse GFF3 and filter to just mRNA features: recs fromgff3 hg38.gff | recs grep '{{type}} eq "mRNA"'
App::RecordStream::Bio
To install App::RecordStream::Bio, copy and paste the appropriate command in to your terminal.
cpanm
cpanm App::RecordStream::Bio
CPAN shell
perl -MCPAN -e shell install App::RecordStream::Bio
For more information on module installation, please visit the detailed CPAN module installation guide.