Jeremy Volkening
and 1 contributors

NAME

BioX::Seq::Stream::TwoBit - the TwoBit parser for BioX::Seq:Stream;

DESCRIPTION

This module performs parsing of TwoBit sequence streams. It is not intended to be used directly but is called by BioX::Seq::Stream after file format autodetection. Please see the documentation for that module for more details.

NOTE: This module is currently considered a proof-of-principle (or perhaps programming exercise). It is very slow compared to Jim Kent's TwoBit C utilities and should be avoided for any production code where execution speed matters.

CAVEATS AND BUGS

Please report any bugs or feature requests to the issue tracker at https://github.com/jvolkening/p5-BioX-Seq.

AUTHOR

Jeremy Volkening <jeremy *at* base2bio.com>

COPYRIGHT AND LICENSE

Copyright 2014-2017 Jeremy Volkening

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.