App::Fasops - operating blocked fasta files
fasops <command> [-?h] [long options...] -? -h --help show help Available commands: commands: list the application's commands help: display a command's help screen axt2fas: convert axt to blocked fasta check: check genome locations in (blocked) fasta headers concat: concatenate sequence pieces in blocked fasta files consensus: create consensus from blocked fasta file covers: scan blocked fasta files and output covers on chromosomes join: join multiple blocked fasta files by common target links: scan blocked fasta files and output bi/multi-lateral range links maf2fas: convert maf to blocked fasta mergecsv: merge csv files based on @fields names: scan blocked fasta files and output all species names refine: realign blocked fasta file with external programs replace: replace headers from a blocked fasta separate: separate blocked fasta files by species slice: extract alignment slices from a blocked fasta split: split blocked fasta files to per-alignment files stat: basic statistics on alignments subset: extract a subset of species from a blocked fasta xlsx: paint substitutions and indels to an excel file
fasops commands for usage information.
Qiang Wang <firstname.lastname@example.org>
This software is copyright (c) 2014 by Qiang Wang.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.