NAME

show-align2clustalw.pl - convert mummer alignment files to clustalw format

SYNOPSIS

    # store results in OUTPUT.aln
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln> <CLUSTALW_OUTPUT.aln>

    # print results to standard output
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln>
    # or
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln> -

DESCRIPTION

This script converts MUMMER's show-aligns output to clustalw formatted output.

OPTIONS

Alternative option names are separated by "|".

--help|h|?

Complete help.

SEE ALSO

Bio::FeatureIO, Bio::SeqFeature::Generic

AUTHOR

jw bargsten, <joachim.bargsten at wur.nl>