Bio::Tools::Prints - Parser for FingerPRINTScanII program
use Bio::Tools::Prints; my $prints_parser = new Bio::Tools::Prints(-fh =>$filehandle ); while( my $prints_feat = $prints_parser->next_result ) { push @prints_feat, $prints_feat; }
PRINTScan II is a PRINTS fingerprint identification algorithm. Copyright (C) 1998,1999 Phil Scordis
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::Tools::Prints(-fh=>$filehandle); Function: Builds a new Bio::Tools::Prints object Returns : Bio::Tools::Prints Args : -filename -fh (filehandle)
Title : next_result Usage : my $feat = $prints_parser->next_result Function: Get the next result set from parser data Returns : L<Bio::SeqFeature::Generic> Args : none
Title : create_feature Usage : my $feat=$prints_parser->create_feature($feature,$seqname) Function: creates a SeqFeature Generic object Returns : L<Bio::SeqFeature::Feature> Args :
Title : print_sac Usage : $prints_parser->print_sac($print_sac) Function: get/set for print_sac Returns : Args :
Title : seqname Usage : $prints_parser->seqname($seqname) Function: get/set for seqname Returns : Args :
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.