Bridget McInnes

Documentation

  • mm-xml2aw-xml.pl - This program converts MetaMap xml (mm-xml) formatted text into the all words xml (aw-xml) format.
  • plain2mm-xml.pl - This program converts plain text into MetaMap xml (mm-xml) formatted text.
  • umls-allwords-senserelate.pl - This program performs all-words word sense disambiguation and assigns senses from the UMLS to each ambiguous term in a runnning text using semantic similarity measures.
  • umls-senserelate-evaluation.pl - This program evaluates the umls-senserelate algorithm using the semeval scorer program
  • umls-senserelate-ttest.pl - This program calculates the pairwise t-test of two info files.
  • umls-targetword-senserelate.pl - This program performs target word disambiguation and determines the correct sense of an ambiguous term using semantic similarity measures.

Modules

  • UMLS::SenseRelate - A suit of Perl modules that implement the senserelate word sense disambiguation algorithm using the semantic similarity and relatedness options from the UMLS::Similarity package.
  • UMLS::SenseRelate::AllWords - A Perl module that implement the all-words word sense disambiguation using the sense relate wsd algorithm based on the semantic similarity and relatedness options from the UMLS::Similarity package.
  • UMLS::SenseRelate::ErrorHandler - A Perl module that provides the error handeling for the modules in the UMLS-SenseRelate package.
  • UMLS::SenseRelate::TargetWord - A Perl module that implement the target word word sense disambiguation using the sense relate wsd algorithm based on the semantic similarity and relatedness options from the UMLS::Similarity package.