Documentation

Annotate some bacteria
Create a spreadsheet with gene name occurances
Parse genes out of gff files

Modules

Automated annotation of assemblies
provide a commandline interface to the annotation wrappers
Create a spreadsheet with gene name occurances
provide a commandline interface to pull out genes from multiple GFF files
Exceptions for input data
Run and parse the output of cmscan
Parse the gene names from multiple GFF files and provide a matrix of matches.
Parse a GFF and efficiently extract out the Gene Names
Parse a GFF file and efficiency extract the gene sequence.
Parse GFF files and efficiency extract the gene sequence.
Prokka class for bacterial annotation
Output a spreadsheet with the gene occurances per file