231 results (0.147 seconds)
++ed by:
CJFIELDS RBUELS TSIBLEY

3 PAUSE user(s)
1 non-PAUSE user(s).

Robert Buels
Documentation
Bio::Chado::Schema::Result::CellLine - For describing cell lines
Bio::Chado::Schema::Result::Companalysis - Augments sequence module with descriptions of computational analyses and features resulting from those analyses
Bio::Chado::Schema::Result::Composite - A collection of bridge codes that have multiple dependancies so they don't happily go where is most obvious
Bio::Chado::Schema::Result::Contact - model persons, institutes, groups, organizations, etc
Bio::Chado::Schema::Result::Cv - Controlled vocabularies and ontologies
Bio::Chado::Schema::Result::Expression - transcript or protein expression data
Bio::Chado::Schema::Result::General - General purpose tables, including dbxrefs
Bio::Chado::Schema::Result::Genetic - Genotypes and mutant alleles
Bio::Chado::Schema::Result::Library - For describing molecular libraries
Bio::Chado::Schema::Result::Mage - Alternative expression module, based on MAGE model
Bio::Chado::Schema::Result::Map - Non-sequence maps: genetic, radiation hybrid, cytogenetic, etc
Bio::Chado::Schema::Result::NaturalDiversity - Natural diversity module for dealing with populations, samples, genotypes, phenotypes and results of other assays.
Bio::Chado::Schema::Result::Organism - Species data - does not include phylogeny
Bio::Chado::Schema::Result::Phenotype - Entity-attribute-value phenotypic character descriptions
Bio::Chado::Schema::Result::Phylogeny - For representing phylogenetic trees; the trees represent the phylogeny of some some kind of sequence feature (mainly proteins) or actual organism taxonomy trees
Bio::Chado::Schema::Result::Project - The project table has been moved from general to its own module and has been expanded to provide properties, publications and contacts.
Bio::Chado::Schema::Result::Pub - Bibliographic data on publications
Bio::Chado::Schema::Result::Sequence - Sequence and sequence features, their localization and properties
Bio::Chado::Schema::Result::Stock - For tracking stock collections
update_dbic_dump.pl - developer-only maintenance script to sync this DBIx::Class object layer with the latest upstream version of Chado
Modules
Bio::Chado::Schema - A standard DBIx::Class layer for the Chado database schema.
Bio::Chado::Schema::Result::Composite::FeatureDisjoint - featurelocs do not meet. symmetric
Bio::Chado::Schema::Result::Contact::Contact - Model persons, institutes, groups, organizations, etc.
Bio::Chado::Schema::Result::Contact::ContactRelationship - Model relationships between contacts
Bio::Chado::Schema::Result::Cv::CvCvtermCount - per-cv terms counts (excludes obsoletes)
Bio::Chado::Schema::Result::Cv::CvCvtermCountWithObs - per-cv terms counts (includes obsoletes)
Bio::Chado::Schema::Result::Expression::Expression - The expression table is essentially a bridge table.
Bio::Chado::Schema::Result::Genetic::Environment - The environmental component of a phenotype description.
Bio::Chado::Schema::Result::Mage::Acquisitionprop - Parameters associated with image acquisition.
Bio::Chado::Schema::Result::Mage::Assayprop - Extra assay properties that are not accounted for in assay.
Bio::Chado::Schema::Result::Mage::Protocol - Procedural notes on how data was prepared and processed.
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentDbxref - Cross-reference experiment to accessions, images, etc
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentProtocol - Linking table: experiments to the protocols they involve.
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPub - Linking nd_experiment(s) to publication(s)
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStockDbxref - Cross-reference experiment_stock to accessions, images, etc
Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolprop - Property/value associations for protocol.
Bio::Chado::Schema::Result::Organism::Organismprop - Tag-value properties - follows standard chado model.
Bio::Chado::Schema::Result::Phylogeny::Phylotree - Global anchor for phylogenetic tree.
Bio::Chado::Schema::Result::Project::Project - Standard Chado flexible property table for projects.
Bio::Chado::Schema::Result::Project::ProjectContact - Linking table for associating projects and contacts.
Bio::Chado::Schema::Result::Project::ProjectPub - Linking table for associating projects and publications.
Bio::Chado::Schema::Result::Sequence::FeaturePubprop - Property or attribute of a feature_pub link.
Bio::Chado::Schema::Result::Sequence::FeatureRelationshippropPub - Provenance for feature_relationshipprop.
Bio::Chado::Schema::Result::Sequence::FeatureSynonym - Linking table between feature and synonym.
Bio::Chado::Schema::Result::Sequence::TypeFeatureCount - per-feature-type feature counts
Bio::Chado::Schema::Test - Library to be used by Bio::Chado::Schema test scripts.
Bio::Chado::Schema::Util - utility functions shared by Bio::Chado::Schema objects
Provides
Bio::Chado::Schema::Result::Cv::Cvterm::ResultSet in lib/Bio/Chado/Schema/Result/Cv/Cvterm.pm
Bio::Chado::Schema::Result::Sequence::Cvtermsynonym in lib/Bio/Chado/Schema/Result/Sequence/Cvtermsynonym.pm
Bio::Chado::Schema::Result::Stock::Stock::ResultSet in lib/Bio/Chado/Schema/Result/Stock/Stock.pm
Changes for version 0.20000
  • added Bio::Chado::NaturalDiversity::Reports, which has some canned
    • reporting functions for working with natural diversity data (nmenda)
  • added greate_genotypeprops to Genetic::Genotype (nmenda)
  • added stock_phenotypes_rs, recursive_phenotypes_rs,
    • stock_genotypes_rs, and stock_project_phenotypes to Stock::Stock
    • (nmenda)



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