Bio-Variation

Changes for version 1.7.5 - 2020-01-06

Remove Bio::DB::EMBL and Bio::DB::NCBIHelper dependencies, which cause a circular dependency (see issue #3)

finding flanking sequences for a variant in a sequence position

Sequence change class for polypeptides

point mutation and codon information from single amino acid changes

Sequence object with allele-specific attributes

DNA level mutation class

Handler for sequence variation IO Formats

flat file sequence variation input/output stream

XML sequence variation input/output stream

Sequence change class for RNA level

submitted SNP

Container class for mutation/variant descriptions

Sequence Change SeqFeature abstract class

in lib/Bio/Variation.pm

To install Bio::Variation, copy and paste the appropriate command in to your terminal.

cpanm Bio::Variation

perl -MCPAN -e shell
install Bio::Variation

For more information on module installation, please visit the detailed CPAN module installation guide.

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