Bio-Tools-Phylo-PAML

Changes for version 1.7.3 - 2018-07-01

Bio::Installer::PAML has been removed. Not only did it no longer work, it was also unsecure. Either install PAML via your system package manager, or download it from upstream, currently at http://abacus.gene.ucl.ac.uk/software/paml.html
Check for the presence of paml programs now happens during build instead of during the test phase. This avoids failure reports from CPAN Testers.
Fixed reading of results for at least codeml and yno00 in cases where next_result was previously returning undef. May be specific to PAML version 4.8 and 4.9 (current PAML version).

calculate pairwise Ka,Ks for a set of sequences

Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00

Parses output from the PAML program codeml

A container for NSSite Model Result from PAML

A PAML result set object

Wrapper aroud the PAML program baseml

Wrapper aroud the PAML program codeml

Wrapper aroud the PAML program evolver

Wrapper aroud the PAML program yn00

To install Bio::Tools::Phylo::PAML, copy and paste the appropriate command in to your terminal.

cpanm Bio::Tools::Phylo::PAML

perl -MCPAN -e shell
install Bio::Tools::Phylo::PAML

For more information on module installation, please visit the detailed CPAN module installation guide.

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