Documentation

Load GFF into a SeqFeature database

Modules

Normalized feature for use with Bio::DB::SeqFeature::Store
Normalized feature for use with Bio::DB::SeqFeature::Store
Interface for normalized features
Interface for normalized features whose hierarchy is stored in a table
Location-based access to genome annotation data
Storage and retrieval of sequence annotation data
utility methods for creating and iterating over SeqFeature records
PostgreSQL implementation of Bio::DB::SeqFeature::Store
SQLite implementation of Bio::DB::SeqFeature::Store
Mysql implementation of Bio::DB::SeqFeature::Store
feature file loader for Bio::DB::SeqFeature::Store
GFF2 file loader for Bio::DB::SeqFeature::Store
GFF3 file loader for Bio::DB::SeqFeature::Store
Internal utility for Bio::DB::SeqFeature::Store
fetch and store objects from a BerkeleyDB
Storage and retrieval of sequence annotation data in Berkeleydb files
Storage and retrieval of sequence annotation data in Berkeleydb files
In-memory implementation of Bio::DB::SeqFeature::Store

Provides

in lib/Bio/DB/SeqFeature/Store/berkeleydb.pm
in lib/Bio/DB/SeqFeature/Store.pm
in lib/Bio/DB/SeqFeature/Store/berkeleydb.pm
in lib/Bio/DB/SeqFeature/Store/memory.pm