bp_extract_feature_seq - extract the corresponding sequence for a specified feature type
bp_extract_feature_seq [--format FORMAT] [--feature CDS] [--output FILE] [--input] FILE
This script will extract the sequence for all the features you specify.
Specifies the sequence file to be read.
Format of the file specified by --input. If not given, it will try to guess the correct format from the file extension.
Feature to be extracted. By default, it extracts the CDS feature.
File where the extracted features will be saved. If not specified, STDOUT is used.
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Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:
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Jason Stajich <jason-at-bioperl-dot-org>
To install BioPerl, copy and paste the appropriate command in to your terminal.
cpanm
cpanm BioPerl
CPAN shell
perl -MCPAN -e shell install BioPerl
For more information on module installation, please visit the detailed CPAN module installation guide.