Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
# You wouldn't normally create these manually; # instead they would be produced by Bio::SearchIO::fasta use Bio::Search::Hit::Fasta; my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);
Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained during a library search. Some information will be algorithm-specific, but others will be generally defined, such as the ability to obtain alignment objects corresponding to each hit.
Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.
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bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
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Email amackey-at-virginia.edu
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Function: where the heavy stuff will happen when new is called
Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL
To install BioPerl, copy and paste the appropriate command in to your terminal.
cpanm
cpanm BioPerl
CPAN shell
perl -MCPAN -e shell install BioPerl
For more information on module installation, please visit the detailed CPAN module installation guide.