Bio::DB::Persistent::PrimarySeq - Proxy object for database PrimarySeq representations
Give standard usage here
This is a proxy object which will ferry calls to/from database for the heavy stuff (sequence data) while it stores the simple attributes in memory. This object is obtained from a DBAdaptor.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bio.perl.org
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:
bioperl-bugs@bio.perl.org http://redmine.open-bio.org/projects/bioperl/
Email hlapp at gmx.net Based in idea largely on Bio::DB::PrimarySeq by Ewan Birney.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : seq Usage : Function: Overridden from Bio::PrimarySeq::seq to allow for lazy loading. Example : Returns : Args :
Title : subseq Usage : Function: Overridden from Bio::PrimarySeq::subseq to allow for intelligent database queries or delegation to the sequence object. Example : Returns : Args :
Title : seq_has_changed Usage : $obj->seq_has_changed($newval) Function: Example : Returns : TRUE or FALSE Args : new value (TRUE or FALSE, optional)
Title : _seq_is_fetched Usage : $obj->_seq_is_fetched($newval) Function: Example : Returns : TRUE or FALSE Args : new value (TRUE or FALSE, optional)
To install Bio::BioEntry, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::BioEntry
CPAN shell
perl -MCPAN -e shell install Bio::BioEntry
For more information on module installation, please visit the detailed CPAN module installation guide.