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Bio-MUST-Drivers-0.210160
River stage one • 4 direct dependents • 4 total dependents
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Changes for version 0.210160 - 2021-01-16

  • Fixes
    • Blast: made Blastable role taint-safe
    • Blast: remote tests are now disabled by default
    • Exonerate: now forces Homebrew to install historical version 2.2.0
    • Hmmer: updated tests to HMMER 3.3
    • Mafft: updated tests to MAFFT 7.453

Modules

Bio::MUST::Drivers
Bio::MUST classes for driving external programs
Bio::MUST::Drivers::Blast
Bio::MUST driver for running the NCBI-BLAST+ suite of programs
Bio::MUST::Drivers::Blast::Database
Internal class for BLAST driver
Bio::MUST::Drivers::Blast::Database::Temporary
Internal class for BLAST driver
Bio::MUST::Drivers::Cap3
Bio::MUST driver for running the CAP3 assembly program
Bio::MUST::Drivers::CdHit
Bio::MUST driver for running the CD-HIT program
Bio::MUST::Drivers::ClustalO
Bio::MUST driver for running the Clustal Omega program
Bio::MUST::Drivers::Exonerate
Bio::MUST driver for running the Exonerate alignment program
Bio::MUST::Drivers::Exonerate::Aligned
Bio::MUST driver for running the exonerate alignment program
Bio::MUST::Drivers::Exonerate::Sugar
Internal class for exonerate driver
Bio::MUST::Drivers::Hmmer
Bio::MUST driver for running HMMER3
Bio::MUST::Drivers::Hmmer::Model
Internal class for HMMER3 driver
Bio::MUST::Drivers::Hmmer::Model::Database
Internal class for HMMER3 driver
Bio::MUST::Drivers::Hmmer::Model::Temporary
Internal class for HMMER3 driver
Bio::MUST::Drivers::Mafft
Bio::MUST driver for running the MAFFT program
Bio::MUST::Drivers::Roles::Blastable
BLAST database-related methods
Bio::MUST::Drivers::Roles::Hmmerable
HMMER model-related methods
Bio::MUST::Drivers::Utils
Utility functions for drivers
Bio::MUST::Provision::Blast
Internal class for app provisioning system
Bio::MUST::Provision::Cap3
Internal class for app provisioning system
Bio::MUST::Provision::CdHit
Internal class for app provisioning system
Bio::MUST::Provision::ClustalO
Internal class for app provisioning system
Bio::MUST::Provision::Exonerate
Internal class for app provisioning system
Bio::MUST::Provision::Hmmer
Internal class for app provisioning system
Bio::MUST::Provision::Mafft
Internal class for app provisioning system

Other files