Modules

• GO::AnnotatedGene
• GO::Annotation
• GO::AnnotationProvider - abstract base class defining interface for how Annotation information should be provided
• GO::AnnotationProvider::AnnotationParser - parses a gene annotation file
• GO::Node - provides information about a node in the Gene Ontology
• GO::OntologyProvider - abstract base class providing API for the provision on Gene Ontology information
• GO::OntologyProvider::OboParser - Provides API for retrieving data from Gene Ontology obo file.
• GO::OntologyProvider::OntologyParser - Provides API for retrieving data from Gene Ontology files
• GO::Reference
• GO::TermFinder - identify GO nodes that annotate a group of genes with a significant p-value
• GO::TermFinderReport::Html - prints an html table of the results of GO::TermFinder
• GO::TermFinderReport::Text - prints results of GO::TermFinder as a text report
• GO::Utils::File - simply utility module for dealing with file parsing
• GO::Utils::General - provides some general utilities for clients of other GO classes
• GO::View - Creates a gif or png image for visualizing the GO DAG
• GO::View::GD - a helper class for GO::View to deal with the image