Changes for version 0.86 - 2009-11-19
- Constrain the p-value to not be more than 1, which sometimes happens due to rounding errors on some platforms.
- GO::AnnotationProvider - abstract base class defining interface for how Annotation information should be provided
- GO::AnnotationProvider::AnnotationParser - parses a gene annotation file
- GO::Node - provides information about a node in the Gene Ontology
- GO::OntologyProvider - abstract base class providing API for the provision on Gene Ontology information
- GO::OntologyProvider::OboParser - Provides API for retrieving data from Gene Ontology obo file.
- GO::OntologyProvider::OntologyParser - Provides API for retrieving data from Gene Ontology files
- GO::TermFinder - identify GO nodes that annotate a group of genes with a significant p-value
- GO::TermFinderReport::Html - prints an html table of the results of GO::TermFinder
- GO::TermFinderReport::Text - prints results of GO::TermFinder as a text report
- GO::Utils::File - simply utility module for dealing with file parsing
- GO::Utils::General - provides some general utilities for clients of other GO classes
- GO::View - Creates a gif or png image for visualizing the GO DAG
- GO::View::GD - a helper class for GO::View to deal with the image