GO::AnnotatedGene

GO::Annotation

GO::AnnotationProvider - abstract base class defining interface for how Annotation information should be provided

GO::AnnotationProvider::AnnotationParser - parses a gene annotation file

GO::Node - provides information about a node in the Gene Ontology

GO::OntologyProvider - abstract base class providing API for the provision on Gene Ontology information

GO::OntologyProvider::OboParser - Provides API for retrieving data from Gene Ontology obo file.

GO::OntologyProvider::OntologyParser - Provides API for retrieving data from Gene Ontology files

GO::Reference

GO::TermFinder - identify GO nodes that annotate a group of genes with a significant p-value

GO::TermFinderReport::Html - prints an html table of the results of GO::TermFinder

GO::TermFinderReport::Text - prints results of GO::TermFinder as a text report

GO::Utils::File - simply utility module for dealing with file parsing

GO::Utils::General - provides some general utilities for clients of other GO classes

GO::View - Creates a gif or png image for visualizing the GO DAG

GO::View::GD - a helper class for GO::View to deal with the image