Nathan Nutter

Changes for version 0.04

  • Implemented generalized linear models for regression analyses against clinical data
  • Added tools to generate typical visualizations like Kaplan-Meier survival estimates, and mutation status matrices
  • Support for TCGA Mutation Annotation Format (MAF) version 2.3
  • Performance improvements in mutation rate calculations, and more efficient memory usage
  • Added support for wiggle track format files describing coverage, if BAMs are unavailable
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