58 results (0.035 seconds)
Alexandre Masselot
Documentation
computePI.pl - Compute isoelectric point (pI)
computeRT.pl - Compute retention time
extractUniquePeptSpectra.pl - Extracts unique peptides from a .peptSpectra.xml file
filterPeptSpectra.pl - Filters the matches of a .peptSpectra.xml file
fragErrorDistr.pl - Extraction of fragment ion mass errors from .peptSpectra.xml files
getIonIntensities.pl - Extraction of ion intensities information from a .peptSpectra.xml file
idr2pept.pl - Extraction of reliable peptide/spectrum matches from Phenyx .idr.xml files
mascot2pept.pl - Extraction of reliable peptide/spectrum matches from Mascot .dat files
parentErrorDistr.pl - Extraction of parent ion mass errors from .peptSpectra.xml files
splice-idj.pl - extract a subset of spectra from an idj to porduce another one
splitPeptSpectraAtRandom.pl - Splits a .peptSpectra.xml file in two .peptSpectra.xml files
Modules
InSilicoSpectro - Open source Perl library for proteomics
InSilicoSpectro::InSilico::AASequence - Elementary protein sequence.
InSilicoSpectro::InSilico::ExpCalibrator - Calibrates a RetentionTimer predictor based on experimental data
InSilicoSpectro::InSilico::InternIonSeries - Perl class to represent internal fragment ion series.
InSilicoSpectro::InSilico::IonSeries - Perl class to represent fragment ion series.
InSilicoSpectro::InSilico::IsoelPoint - A class for peptide isoelectric point (pI) prediction
InSilicoSpectro::InSilico::MSMSOutput - An object implementing common display/output methods for masses
InSilicoSpectro::InSilico::MSMSTheoSpectrum - Perl class to represent MS/MS theoretical spectra
InSilicoSpectro::InSilico::MassCalculator - Implements common mass computations in mass spectrometry
InSilicoSpectro::InSilico::PMFMatch - Perl class to represent PMF matches
InSilicoSpectro::InSilico::Peptide - A class for digestion products
InSilicoSpectro::InSilico::RetentionTimer - A base class for implementing a peptide retention time predictor
InSilicoSpectro::InSilico::Sequence - Elementary sequence object
InSilicoSpectro::InSilico::TermIonSeries - Perl class to represent N-/C-terminal fragment ion series.
InSilicoSpectro::Spectra::ExpSpectrum - A class for representing spectra.
InSilicoSpectro::Spectra::PeakDescriptor - Description of peak properties
Provides
InSilicoSpectro::Spectra::MSSpectra in lib/InSilicoSpectro/Spectra/MSSpectra.pm



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