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CracTools-1.21
River stage one • 1 direct dependent • 1 total dependent
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Documentation

cractools
Extract, format, classify and annote events identified by CRAC.
generateCracSummary.pl
Generate Crac's summary from SAM file
mix_summarize_crac
a script to outline % locations per library

Modules

CracTools
A set of tools designed to extract data from CRAC's SAM files and to provide annotations.
CracTools::Annotator
Generic annotation base on CracTools::GFF::Query::File
CracTools::App
CracTools App::Cmd
CracTools::App::Command
base class for cractools commands
CracTools::App::Command::Extract
CracTools::App::Command::GtfToGff
CracTools::BitVector
Full Perl BitVector implementation
CracTools::Config
Manage and access CracTools configuration file
CracTools::Const
Constants for the CracTools-core
CracTools::GFF::Annotation
Parse GFF lines.
CracTools::GenomeMask
A bit vector mask over the whole genome
CracTools::Interval::Query
Store and query genomics intervals.
CracTools::Interval::Query::File
Acts like CracTools::Interval::Query but read interval from files and return lines of the file matching the query.
CracTools::Output
A module to manage CracTools output files.
CracTools::SAMReader
An easy to use tool to read files in SAM format.
CracTools::SAMReader::SAMline
The object for manipulation a SAM line.
CracTools::Utils
A set of useful functions

Other files