Bio-Graphics

Modules

Bio::Graphics

Generate GD images of Bio::Seq objects

Bio::Graphics::Feature

A simple feature object for use with Bio::Graphics::Panel

Bio::Graphics::FeatureFile

Parse a simple feature file format into a form suitable for rendering

Bio::Graphics::Glyph

Base class for Bio::Graphics::Glyph objects

Bio::Graphics::Glyph::alignment

The "alignment" glyph

Bio::Graphics::Glyph::anchored_arrow

The "anchored_arrow" glyph

Bio::Graphics::Glyph::arrow

The "arrow" glyph

Bio::Graphics::Glyph::box

The "box" glyph

Bio::Graphics::Glyph::crossbox

The "crossbox" glyph

Bio::Graphics::Glyph::diamond

The "diamond" glyph

Bio::Graphics::Glyph::dna

The "dna" glyph

Bio::Graphics::Glyph::dot

The "dot" glyph

Bio::Graphics::Glyph::ellipse

The "ellipse" glyph

Bio::Graphics::Glyph::ex

The "crossbox" glyph

Bio::Graphics::Glyph::generic

The "generic" glyph

Bio::Graphics::Glyph::graded_segments

The "graded_segments" glyph

Bio::Graphics::Glyph::group

The "group" glyph

Bio::Graphics::Glyph::line

The "line" glyph

Bio::Graphics::Glyph::oval

The "oval" glyph

Bio::Graphics::Glyph::pinsertion

The "Drosophila P-element Insertion" glyph

Bio::Graphics::Glyph::primers

The "STS primers" glyph

Bio::Graphics::Glyph::rndrect

The "round rect" glyph

Bio::Graphics::Glyph::segmented_keyglyph

The "segmented_keyglyph" glyph

Bio::Graphics::Glyph::segments

The "segments" glyph

Bio::Graphics::Glyph::span

The "span" glyph

Bio::Graphics::Glyph::toomany

The "too many to show" glyph

Bio::Graphics::Glyph::track

The "track" glyph

Bio::Graphics::Glyph::transcript

The "transcript" glyph

Bio::Graphics::Glyph::transcript2

The "transcript2" glyph

Bio::Graphics::Glyph::triangle

The "triangle" glyph

Bio::Graphics::Glyph::wormbase_transcript

The "wormbase_transcript" glyph

Bio::Graphics::Panel

Generate GD images of Bio::Seq objects

Provides

Bio::Graphics::Glyph::Factory

in Graphics/Glyph/Factory.pm

Examples

Other files

To install Bio::Graphics, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::Graphics

CPAN shell

perl -MCPAN -e shell
install Bio::Graphics

For more information on module installation, please visit the detailed CPAN module installation guide.

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Modules

Provides

Examples

Other files

Module Install Instructions