The Perl Toolchain Summit needs more sponsors. If your company depends on Perl, please support this very important event.

Changes for version 0.8.0 - 2007-07-30

  • POD improvements
  • direct_and_rev_com
  • RE back-end
  • use Fatal qw(open close), removed own exception handling
  • replaced global dirhandle in BackendI with local dirhandle
  • more tests
  • renamed generate_database_out_of_fastafile() to generate_database()
  • renamed Backends/ to Backend
  • Bugfixes:
    • GUUGle back-end confused when sequence description missing

Documentation

Wrapper for several suffix array tools

Modules

Perl extension for searching in Fasta files
Agrep back-end
Superclass for all back-ends
GUUGle back-end
HyPa back-end
Perl Regular Expression back-end
Vmatch back-end
Data structure for a back-end search hit
Data structure for all search settings
Superclass for all filter modules
Superclass for all Bio::Grep* packages