Bio-Grep

Changes for version 0.8.3 - 2007-07-02

POD improvements
dynamically loaded back-ends
check arguments of $sbe->get_sequences
more tests
Bio::Grep now returns a back-end object.
Bugfixes:
- GUUGle back-end confused when sequence description missing with up-/downstream regions

Bio::Grep Cookbook

Wrapper for several suffix array tools

Perl extension for searching in Fasta files

Agrep back-end

Superclass for all back-ends

GUUGle back-end

HyPa back-end

Perl Regular Expression back-end

Vmatch back-end

Superclass for all filter modules

Example Filter

Superclass for all Bio::Grep* packages

Data structure for a back-end search hit

Data structure for all search settings

To install Bio::Grep, copy and paste the appropriate command in to your terminal.

cpanm Bio::Grep

perl -MCPAN -e shell
install Bio::Grep

For more information on module installation, please visit the detailed CPAN module installation guide.

	Global
`s`	Focus search bar
`?`	Bring up this help dialog

	GitHub
`g` `p`	Go to pull requests
`g` `i`	go to github issues (only if github is preferred repository)

	Search terms
module: (e.g. module:Plugin)
distribution: (e.g. distribution:Dancer auth)
author: (e.g. author:SONGMU Redis)
version: (e.g. version:1.00)