Changes for version 0.191620 - 2019-06-11

  • first release

Documentation

This script draws NRPS/PKS gene clusters in PNG
This script reports all detected domain signatures for a NRPS/PKS gene cluster without any predefined consensus architecture
Exports SQL tables of BGC results (antiSMASH or Palantir version)
This script extracts protein sequences at several gene cluster levels and generates a FASTA file in output
Generates a denormalized table from BGC architectures
This script generates customizable PDF reports of antiSMASH results (i.e., gene cluster filter)

Modules

core classes and utilities for Bio::Palantir CONTRIBUTOR: Denis
front-end class for Bio::Palantir::Explorer module, wich handles the NRPS/PKS domain exploration without pre-existing consensus architecture
Explorer internal class for handling ClusterFasta objects
Explorer internal class for handling GeneFasta objects
front-end class for Bio::Palantir::Parser module, wich handles the parsing of biosynML.xml and regions.js antiSMASH reports
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
BiosynML DTD-derived internal class
front-end class for Bio::Palantir::Refiner module, wich handles the refinement of NRPS/PKS BGC annotations
Refiner internal class for handling ClusterPlus objects
Refiner internal class for handling DomainPlus objects
Refiner internal class for handling GenePlus objects
Clusterable Moose role for Cluster and ClusterPlus objects
Domainable Moose role for Domain and DomainPlus objects
Fillable Moose role for the construction of DomainPlus object arrays and Exploratory methods
Geneable Moose role for Gene and GenePlus objects
Modulable Moose role for Module and ModulesPlus object construction
BiosynML DTD-derived internal class