Modules

• MS - Namespace for mass spectrometry-related libraries
• MS::CV - interface to HUPO PSI controlled vocabularies
• MS::Mass - core functions for molecular mass calculations
• MS::PepInfo - utility functions for proteomics calculations
• MS::Peptide - A class representing peptide species for proteomic analysis
• MS::Protein - A class representing protein species for proteomic analysis
• MS::Reader - Base class for all file parsers
• MS::Reader::ImzML - A simple but complete imzML parser
• MS::Reader::ImzML::Spectrum - An ImzML spectrum object
• MS::Reader::MGF - A simple but complete MGF parser
• MS::Reader::MGF::Spectrum - An MGF spectrum object
• MS::Reader::MSn - A simple but complete MS1/MS2 parser
• MS::Reader::MSn::Spectrum - An MSn spectrum object
• MS::Reader::MzIdentML - A simple but complete mzIdentML parser
• MS::Reader::MzIdentML::DBSequence - mzIdentML database sequence object
• MS::Reader::MzIdentML::Peptide - mzIdentML peptide object
• MS::Reader::MzIdentML::PeptideEvidence - mzIdentML peptide evidence object
• MS::Reader::MzIdentML::ProteinAmbiguityGroup - mzIdentML protein group object
• MS::Reader::MzIdentML::SequenceItem - base class for SequenceCollection children
• MS::Reader::MzIdentML::SpectrumIdentificationResult - mzIdentML result object
• MS::Reader::MzML - A simple but complete mzML parser
• MS::Reader::MzML::Chromatogram - An MzML chromatogram object
• MS::Reader::MzML::Record - The base class for MzML spectrum and chromatogram records
• MS::Reader::MzML::Spectrum - An MzML spectrum object
• MS::Reader::MzQuantML - A simple but complete mzQuantML parser
• MS::Reader::MzXML - A simple but complete mzXML parser
• MS::Reader::MzXML::Spectrum - An MzXML spectrum object
• MS::Reader::PepXML - A simple but complete pepXML parser
• MS::Reader::PepXML::Result - pepXML search result object
• MS::Reader::ProtXML - A simple but complete protXML parser
• MS::Reader::ProtXML::Group - A protXML protein group
• MS::Reader::XML - Base class for XML-based parsers
• MS::Reader::XML::CV - Base class for XML-based parsers with support for referenceableParamGroups
• MS::Reader::XML::Record - Base class for XML-based records
• MS::Reader::XML::Record::CV - Base class for XML-based records with support for referenceableParamGroups
• MS::Search::DB - A class to facilitate construction of MS/MS protein search databases
• MS::Search::DB::Source::uniprot - interface for Uniprot downloads
• MS::Spectrum - Base class for spectrum objects