Bio::Maxd provides methods for uploading and retrieving
data to/from a maxd (MySQL) database.
"maxd" is a data warehouse and visualization environment for
microarray expression data developed by the Microarray Group at
Manchester Bioinformatics (http://www.bioinf.man.ac.uk/microarray/)
Prerequisites:
DBI 1.29
DBD::mysql 2.1
HTML::Template 2.5
To build:
perl Makefile.PL
make
make test
make install
or 'perl Makefile.PL PREFIX=/path/to/the/directory' to install into
a private directory other than Perl's default one.
NOTES:
1. You may want to set these environment variables for Maxd.pm
to know where to connect to and where the html templates are:
setenv MAXD_USERID "userid/password"
setenv MAXD_HOSTDB "database_host"
setenv MAXD_TEMPLATES "/path/to/where/templates/are"
2. Maxd uses extra tables for simulating a sequence in mysql
for the following tables: Hybridisation, Image, Measurement and
Description. Please run once the script extendMaxD to create and
initialize tables Hybridisation_Seq, Image_Seq, etc.
COPYRIGHT
Copyright (C) 2002 Jaime Prilusky. All rights reserved.
AUTHOR
Jaime Prilusky (Jaime.Prilusky@weizmann.ac.il)