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Proch-N50-1.5.0
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  • 05 Jul 2022 14:49:20 UTC
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  • License: mit
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++ed by:
2 non-PAUSE users
Author image Andrea Telatin 🧬
and 1 contributors

Changes for version 1.5.0 - 2022-06-23

  • Fix: fu-cat length selection, added test
  • Fix: fu-count supports STDIN input
  • Added case insensitive option in fu-extract
  • Added tests for fu-count, fu-grep, fu-extract

Documentation

fu-cat
Concatenate FASTA or FASTQ files
fu-compare
Find the common sequences between two files
fu-count
A FASTA/FASTQ sequence counter
fu-extract
Get sequences by name (also using lists)
fu-grep
Extract sequences using patterns
fu-hash
Print sequence hashes
fu-len
A demo implementation to filter fastx files by length
fu-rename
rename sequences
fu-sort
Sort sequences by size
fu-uniq
Dereplicate sequences
n50
A script to calculate N50 from one or multiple FASTA/FASTQ files.

Modules

Proch::N50
a small module to calculate N50 (total size, and total number of sequences) for a FASTA or FASTQ file. It's easy to install, with minimal dependencies.
Proch::Seqfu
Helper module to support Seqfu tools

Other files