Bio::Phylo::Parsers::Newick - Parses newick trees. No serviceable parts inside.
This module parses tree descriptions in parenthetical format. It is called by the Bio::Phylo::IO facade, don't call it directly.
The newick parser is called by the Bio::Phylo::IO object. Look there to learn how to parse newick strings.
Also see the manual: Bio::Phylo::Manual.
CPAN hosts a discussion forum for Bio::Phylo. If you have trouble using this module the discussion forum is a good place to start posting questions (NOT bug reports, see below): http://www.cpanforum.com/dist/Bio-Phylo
Please report any bugs or feature requests to
email@example.com, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Bio-Phylo. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes. Be sure to include the following in your request or comment, so that I know what version you're using:
$Id: Newick.pm,v 1.24 2006/03/07 20:54:16 rvosa Exp $
Rutger A. Vos,
- web page: http://www.sfu.ca/~rvosa/
The author would like to thank Jason Stajich for many ideas borrowed from BioPerl http://www.bioperl.org, and CIPRES http://www.phylo.org and FAB* http://www.sfu.ca/~fabstar for comments and requests.
Copyright 2005 Rutger A. Vos, All Rights Reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.