Bio::Phylo::Parsers::Taxlist - Parses lists of taxon names. No serviceable parts inside.
This module is used for importing sets of taxa from plain text files, one taxon on each line. It is called by the Bio::Phylo::IO object, so look there for usage examples. If you want to parse from a string, you may need to indicate the field separator (default is '\n') to the Bio::Phylo::IO->parse call:
-fieldsep => '\n',
The taxon list parser is called by the Bio::Phylo::IO object. Look there for examples.
Also see the manual: Bio::Phylo::Manual.
CPAN hosts a discussion forum for Bio::Phylo. If you have trouble using this module the discussion forum is a good place to start posting questions (NOT bug reports, see below): http://www.cpanforum.com/dist/Bio-Phylo
Please report any bugs or feature requests to
firstname.lastname@example.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Bio-Phylo. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes. Be sure to include the following in your request or comment, so that I know what version you're using:
$Id: Taxlist.pm,v 1.18 2005/09/29 20:31:18 rvosa Exp $
Rutger A. Vos,
- web page: http://www.sfu.ca/~rvosa/
The author would like to thank Jason Stajich for many ideas borrowed from BioPerl http://www.bioperl.org, and CIPRES http://www.phylo.org and FAB* http://www.sfu.ca/~fabstar for comments and requests.
Copyright 2005 Rutger A. Vos, All Rights Reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.