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Documentation
applies unique node labels to newick trees.
Bio::Phylo v.0.14 user guide.
Modules
Phylogenetic analysis using perl.
The forest object, a set of phylogenetic trees.
The tree node object.
The tree object.
Generates random trees.
Input and output of phylogenetic data.
Parent class for listable/iterator objects.
Holds a set of matrix objects.
The single observations object.
Character state matrix.
Parses newick trees. No serviceable parts inside.
Parses nexus files. No serviceable parts inside.
Parses tab- (or otherwise) delimited matrices. No serviceable parts inside.
Parses lists of taxon names. No serviceable parts inside.
An object-oriented module for managing taxa.
The operational taxonomic unit.
An object-oriented facade for drawing trees.
Creates svg tree drawings. No serviceable parts inside.
Unparses a forest object into an MRP matrix. No serviceable parts inside.
Unparses newick trees. No serviceable parts inside.
Unparses nexus matrices. No serviceable parts inside.
Unparses pagel data files. No serviceable parts inside.
This package defines global constants and utility functions that operate on them.
Exception classes for Bio::Phylo. No serviceable parts inside.
Utility class for generating object IDs
Provides
in lib/Bio/Phylo.pm
in lib/Bio/Phylo.pm
in lib/Bio/Phylo.pm
in lib/Bio/Phylo.pm
in lib/Bio/Phylo.pm
in lib/Bio/Phylo.pm
in lib/Bio/Phylo.pm
