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Bio-Phylo-0.15
River stage two • 9 direct dependents • 18 total dependents
8 ++
/ Bio::Phylo::Matrices

NAME

Bio::Phylo::Matrices - Holds a set of matrix objects.

SYNOPSIS

 use Bio::Phylo::Matrices;
 use Bio::Phylo::Matrices::Matrix;
 
 my $matrices = Bio::Phylo::Matrices->new;
 my $matrix   = Bio::Phylo::Matrices::Matrix->new;
 
 $matrices->insert($matrix);

DESCRIPTION

The Bio::Phylo::Matrices object models a set of matrices. It inherits from the Bio::Phylo::Listable object, and so the filtering methods of that object are available to apply to a set of matrices.

METHODS

CONSTRUCTOR

new()
 Type    : Constructor
 Title   : new
 Usage   : my $matrices = Bio::Phylo::Matrices->new;
 Function: Initializes a Bio::Phylo::Matrices object.
 Returns : A Bio::Phylo::Matrices object.
 Args    : None required.

DESTRUCTOR

DESTROY()
 Type    : Destructor
 Title   : DESTROY
 Usage   : $phylo->DESTROY
 Function: Destroys Phylo object
 Alias   :
 Returns : TRUE
 Args    : none
 Comments: You don't really need this, 
           it is called automatically when
           the object goes out of scope.

SEE ALSO

Bio::Phylo::Listable

The Bio::Phylo::Matrices object inherits from the Bio::Phylo::Listable object. Look there for more methods applicable to the matrices object.

Bio::Phylo::Manual

Also see the manual: Bio::Phylo::Manual.

FORUM

CPAN hosts a discussion forum for Bio::Phylo. If you have trouble using this module the discussion forum is a good place to start posting questions (NOT bug reports, see below): http://www.cpanforum.com/dist/Bio-Phylo

BUGS

Please report any bugs or feature requests to bug-bio-phylo@rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Bio-Phylo. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes. Be sure to include the following in your request or comment, so that I know what version you're using:

$Id: Matrices.pm 1185 2006-05-26 09:04:17Z rvosa $

AUTHOR

Rutger Vos,

email: rvosa@sfu.ca
web page: http://www.sfu.ca/~rvosa/

ACKNOWLEDGEMENTS

The author would like to thank Jason Stajich for many ideas borrowed from BioPerl http://www.bioperl.org, and CIPRES http://www.phylo.org and FAB* http://www.sfu.ca/~fabstar for comments and requests.

COPYRIGHT & LICENSE

Copyright 2005 Rutger Vos, All Rights Reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.