Bridget McInnes
and 1 contributors

Documentation

  • findAncestors.pl - This program returns a the ancestors of a given CUI based on the configuration file.
  • findCuiDepth.pl - This program returns the minimum and maximum depth of a given CUI or term.
  • findDFS.pl - This program runs a dfs over a specified set of sources and relations in the UMLS.
  • findLeastCommonSubsumer.pl - This program finds the least common subsumer between two concepts.
  • findNumberOfCloserConcepts.pl - This program finds the number of concepts closer to the first concept than the second.
  • findNumberTurns.pl - This program finds the number of terms between in the shoretest path between the two concepts.
  • findPathToRoot.pl - This program returns all possible paths from a given CUI to the root.
  • findShortestPath.pl - This program finds the shoretest path between two concepts.
  • findShortestPathLength.pl - This program finds the length of the shortest path between two concepts.
  • getAssociatedCuis.pl - This program returns all the CUIs of a term.
  • getAssociatedTerms.pl - This program returns all associated terms of a concept.
  • getChildren.pl - This program returns all of a concepts children.
  • getCompounds.pl - This program returns a list of compounds in the UMLS.
  • getCuiDef.pl - This program returns the definition of a concept or a term.
  • getCuiList.pl - This program returns a list of CUIs based on the configuration file.
  • getExtendedDef.pl - This program returns the extended definition of a concept or a term.
  • getIC.pl - This program returns the information content of a concept or a term.
  • getIntrinsicIC.pl - This program returns the intrinsic information content of a concept or a term.
  • getParents.pl - This program returns all of a concepts parents.
  • getRelated.pl - This programs returns all CUIs of a given relation.
  • getRelations.pl - This program returns all of a concepts relations.
  • getSemanticGroup.pl - This program returns a concepts semantic group(s).
  • getSemanticRelation.pl - This program returns a concepts semantic relation(s) between two semantic types
  • getStDef.pl - This program returns the definition of a semantic type.
  • getStString.pl - This program returns the name of a semantic type given its abbreviation.
  • getSts.pl - This program returns a concepts semantic type(s).
  • getTableNames.pl - This program returns the table names associated with a specified configuration file or all that have been created
  • removeConfigData.pl - This program removes the temporary table and associated files that are created based on the configuration file.

Modules